STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORV35465.1Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (685 aa)    
Predicted Functional Partners:
ORV35284.1
Guanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.891
ORV35286.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.816
ORV35285.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.797
ORV35288.1
Geranyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
 
   
 0.593
ORV35287.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.577
ORV43758.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.483
ORV43757.1
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.468
ORV43992.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.439
Your Current Organism:
Mycobacterium conspicuum
NCBI taxonomy Id: 44010
Other names: ATCC 700090, CIP 105165, DSM 44136, JCM 14738, M. conspicuum, strain 3895/92
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