STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG27192.1Hypothetical protein. (1319 aa)    
Predicted Functional Partners:
SDG27215.1
Curli production assembly/transport component CsgG.
 
  
 0.903
SDG27096.1
Minor curlin subunit.
 
    0.784
SDG27109.1
Type VIII secretion system (T8SS), CsgF protein.
 
     0.719
SDG27153.1
Hypothetical protein.
       0.556
SDG27175.1
Hypothetical protein.
       0.556
SDG58523.1
Response regulator receiver domain-containing protein.
  
 0.555
SDG27135.1
Curli production assembly/transport component CsgF.
       0.514
SDH20811.1
PAS domain S-box-containing protein.
   
  0.509
SDG75237.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
    
 0.484
SDG75474.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.434
Your Current Organism:
Pelagibacterium luteolum
NCBI taxonomy Id: 440168
Other names: CELMS EEUT 1C1627, CGMCC 1.10267, Devosia sp. 1_C16_27, Hyphomicrobiaceae bacterium 1_C16_27, JCM 16552, P. luteolum, Pelagibacterium luteolum Xu et al. 2011, strain 1_C16_27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.