Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG51755.1 | SDG74175.1 | SAMN04487974_103315 | SAMN04487974_10752 | Thiosulfate reductase cytochrome b subunit. | Nuclease homologue. | 0.497 |
SDG71347.1 | SDG74175.1 | SAMN04487974_106162 | SAMN04487974_10752 | Outer membrane protein (porin). | Nuclease homologue. | 0.440 |
SDG71347.1 | lptD | SAMN04487974_106162 | SAMN04487974_10523 | Outer membrane protein (porin). | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.793 |
SDG74163.1 | SDG74175.1 | SAMN04487974_10751 | SAMN04487974_10752 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Nuclease homologue. | 0.573 |
SDG74175.1 | SDG51755.1 | SAMN04487974_10752 | SAMN04487974_103315 | Nuclease homologue. | Thiosulfate reductase cytochrome b subunit. | 0.497 |
SDG74175.1 | SDG71347.1 | SAMN04487974_10752 | SAMN04487974_106162 | Nuclease homologue. | Outer membrane protein (porin). | 0.440 |
SDG74175.1 | SDG74163.1 | SAMN04487974_10752 | SAMN04487974_10751 | Nuclease homologue. | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.573 |
SDG74175.1 | guaA | SAMN04487974_10752 | SAMN04487974_13512 | Nuclease homologue. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.746 |
SDG74175.1 | guaB | SAMN04487974_10752 | SAMN04487974_12060 | Nuclease homologue. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.735 |
SDG74175.1 | lptD | SAMN04487974_10752 | SAMN04487974_10523 | Nuclease homologue. | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.467 |
SDG74175.1 | rnpA | SAMN04487974_10752 | SAMN04487974_11414 | Nuclease homologue. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.629 |
SDG74175.1 | tdk | SAMN04487974_10752 | SAMN04487974_103190 | Nuclease homologue. | Thymidine kinase. | 0.425 |
guaA | SDG74175.1 | SAMN04487974_13512 | SAMN04487974_10752 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | Nuclease homologue. | 0.746 |
guaA | guaB | SAMN04487974_13512 | SAMN04487974_12060 | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.999 |
guaB | SDG74175.1 | SAMN04487974_12060 | SAMN04487974_10752 | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | Nuclease homologue. | 0.735 |
guaB | guaA | SAMN04487974_12060 | SAMN04487974_13512 | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.999 |
guaB | tdk | SAMN04487974_12060 | SAMN04487974_103190 | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | Thymidine kinase. | 0.447 |
lptD | SDG71347.1 | SAMN04487974_10523 | SAMN04487974_106162 | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | Outer membrane protein (porin). | 0.793 |
lptD | SDG74175.1 | SAMN04487974_10523 | SAMN04487974_10752 | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | Nuclease homologue. | 0.467 |
rnpA | SDG74175.1 | SAMN04487974_11414 | SAMN04487974_10752 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Nuclease homologue. | 0.629 |
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