Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR57035.1 | SFR63818.1 | SAMN04488010_0638 | SAMN04488010_1400 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Beta-barrel assembly machine subunit BamA. | 0.489 |
SFR57035.1 | pdxJ | SAMN04488010_0638 | SAMN04488010_1395 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.832 |
SFR63759.1 | SFR63765.1 | SAMN04488010_1392 | SAMN04488010_1393 | Trigger factor. | Putative membrane protein. | 0.613 |
SFR63759.1 | SFR63773.1 | SAMN04488010_1392 | SAMN04488010_1394 | Trigger factor. | Pimeloyl-ACP methyl ester carboxylesterase. | 0.503 |
SFR63759.1 | SFR63789.1 | SAMN04488010_1392 | SAMN04488010_1396 | Trigger factor. | CBS domain-containing protein. | 0.461 |
SFR63759.1 | SFR63818.1 | SAMN04488010_1392 | SAMN04488010_1400 | Trigger factor. | Beta-barrel assembly machine subunit BamA. | 0.420 |
SFR63759.1 | pdxJ | SAMN04488010_1392 | SAMN04488010_1395 | Trigger factor. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.515 |
SFR63765.1 | SFR63759.1 | SAMN04488010_1393 | SAMN04488010_1392 | Putative membrane protein. | Trigger factor. | 0.613 |
SFR63765.1 | SFR63773.1 | SAMN04488010_1393 | SAMN04488010_1394 | Putative membrane protein. | Pimeloyl-ACP methyl ester carboxylesterase. | 0.727 |
SFR63765.1 | SFR63789.1 | SAMN04488010_1393 | SAMN04488010_1396 | Putative membrane protein. | CBS domain-containing protein. | 0.538 |
SFR63765.1 | nadK | SAMN04488010_1393 | SAMN04488010_1397 | Putative membrane protein. | NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.535 |
SFR63765.1 | pdxJ | SAMN04488010_1393 | SAMN04488010_1395 | Putative membrane protein. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.726 |
SFR63773.1 | SFR63759.1 | SAMN04488010_1394 | SAMN04488010_1392 | Pimeloyl-ACP methyl ester carboxylesterase. | Trigger factor. | 0.503 |
SFR63773.1 | SFR63765.1 | SAMN04488010_1394 | SAMN04488010_1393 | Pimeloyl-ACP methyl ester carboxylesterase. | Putative membrane protein. | 0.727 |
SFR63773.1 | SFR63789.1 | SAMN04488010_1394 | SAMN04488010_1396 | Pimeloyl-ACP methyl ester carboxylesterase. | CBS domain-containing protein. | 0.689 |
SFR63773.1 | SFR63818.1 | SAMN04488010_1394 | SAMN04488010_1400 | Pimeloyl-ACP methyl ester carboxylesterase. | Beta-barrel assembly machine subunit BamA. | 0.461 |
SFR63773.1 | nadK | SAMN04488010_1394 | SAMN04488010_1397 | Pimeloyl-ACP methyl ester carboxylesterase. | NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.605 |
SFR63773.1 | pdxJ | SAMN04488010_1394 | SAMN04488010_1395 | Pimeloyl-ACP methyl ester carboxylesterase. | Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.831 |
SFR63789.1 | SFR63759.1 | SAMN04488010_1396 | SAMN04488010_1392 | CBS domain-containing protein. | Trigger factor. | 0.461 |
SFR63789.1 | SFR63765.1 | SAMN04488010_1396 | SAMN04488010_1393 | CBS domain-containing protein. | Putative membrane protein. | 0.538 |
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