STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSLysine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (527 aa)    
Predicted Functional Partners:
CUH75237.1
Hypothetical protein.
  
    0.796
CUH75363.1
Tellurite resistance protein.
       0.727
mprF
Phosphatidylglycerol lysyltransferase.
    
  0.697
CUH77546.1
Stringent starvation protein B.
  
     0.696
nusG
Hypothetical protein; Participates in transcription elongation, termination and antitermination.
   
    0.584
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
    0.580
CUH77673.1
Thiamine-phosphate pyrophosphorylase.
  
     0.549
cobT
Aerobic cobaltochelatase subunit CobT.
  
     0.535
recO
Recombination protein O; Involved in DNA repair and RecF pathway recombination.
  
     0.506
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
 
      0.494
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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