STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH75557.1Hypothetical protein. (1253 aa)    
Predicted Functional Partners:
CUH75562.1
Mg-chelatase subunit ChlD.
 
   
 0.958
CUH75560.1
Hypothetical protein.
 
    0.955
CUH75558.1
Gas vesicle protein GvpN.
 
  
 0.951
CUH75564.1
Hypothetical protein.
       0.806
CUH78231.1
Hypothetical protein.
  
     0.702
cheR_1
Chemotaxis protein methyltransferase.
   
 
  0.701
pdtaR_2
Putative transcriptional regulatory protein pdtaR.
    
  0.657
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.634
sigM
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
    
   0.578
sigK_1
Sigma-K factor; Belongs to the sigma-70 factor family. ECF subfamily.
    
   0.578
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.