STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynhG_1Putative L,D-transpeptidase YnhG precursor. (215 aa)    
Predicted Functional Partners:
CUH75568.1
Hypothetical protein.
  
     0.765
CUH81774.1
Hypothetical protein.
  
     0.752
CUH81769.1
L,D-transpeptidase catalytic domain.
 
    0.542
dacB
D-alanyl-D-alanine carboxypeptidase DacB precursor.
     
 0.521
spoVD
Sporulation-specific penicillin-binding protein.
     
 0.500
mepA_2
Penicillin-insensitive murein endopeptidase precursor.
  
     0.472
CUH75557.1
Hypothetical protein.
       0.457
CUH75558.1
Gas vesicle protein GvpN.
       0.457
CUH75560.1
Hypothetical protein.
       0.457
CUH75562.1
Mg-chelatase subunit ChlD.
       0.457
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.