STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araB_1L-arabinolactonase. (284 aa)    
Predicted Functional Partners:
CUH79078.1
2-keto-3-deoxy-galactonokinase.
 
   
 0.812
rmlB
dTDP-glucose 4,6-dehydratase.
    
 0.796
gno_1
Gluconate 5-dehydrogenase.
 
 
  0.788
araC_1
L-arabonate dehydratase; Belongs to the IlvD/Edd family.
 
  
  0.773
CUH75678.1
S-adenosyl-L-methionine-binding protein.
       0.773
araC_2
L-arabonate dehydratase; Belongs to the IlvD/Edd family.
 
  
  0.731
araC_4
L-arabonate dehydratase; Belongs to the IlvD/Edd family.
 
  
  0.725
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
  0.686
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
   
 0.649
gnl
Gluconolactonase precursor.
  
  
  0.614
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.