STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scoAPutative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A. (234 aa)    
Predicted Functional Partners:
scoB_1
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
 0.999
scoB_2
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
 0.999
fadJ_1
Fatty acid oxidation complex subunit alpha.
  
 
 0.918
mdh_2
NAD-dependent methanol dehydrogenase.
  
 
 0.894
catD_1
3-oxoadipate enol-lactonase 2.
  
 
 0.863
fadB
Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.821
fadJ_2
Fatty acid oxidation complex subunit alpha.
  
 
 0.821
fadJ_3
Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.821
yngG_1
Hydroxymethylglutaryl-CoA lyase YngG.
  
 
 0.794
yngG_2
Hydroxymethylglutaryl-CoA lyase YngG.
  
 
 0.794
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.