STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tauB_1Taurine import ATP-binding protein TauB. (264 aa)    
Predicted Functional Partners:
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
 
 0.982
cmpB_2
Bicarbonate transport system permease protein CmpB.
 
 
  0.978
CUH75871.1
Putative thiamine biosynthesis protein.
 
 
 0.933
nrtA
Nitrate transport protein NrtA precursor.
 
 
 0.927
cmpC_1
Bicarbonate transport ATP-binding protein CmpC.
 
 
 0.922
dht
D-hydantoinase/dihydropyrimidinase.
     0.879
cmpB_1
Bicarbonate transport system permease protein CmpB.
 
 0.829
CUH82565.1
ABC transporter, substrate-binding protein, aliphatic sulfonates family.
 
 
 0.796
CUH75875.1
Putative acetyltransferase.
       0.776
CUH75878.1
Hypothetical protein.
       0.773
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.