STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctP_1C4-dicarboxylate-binding periplasmic protein precursor. (340 aa)    
Predicted Functional Partners:
CUH76010.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.914
siaT_1
Neu5Ac permease.
 
     0.877
CUH75986.1
Leucine export protein LeuE.
  
     0.725
siaT_10
Neu5Ac permease.
  
    0.721
siaT_6
Neu5Ac permease.
  
    0.709
siaT_7
Neu5Ac permease.
  
    0.697
siaT_8
Neu5Ac permease.
  
    0.692
siaT_4
Neu5Ac permease.
  
    0.688
siaT_9
Neu5Ac permease.
  
    0.687
siaT_5
Neu5Ac permease.
  
    0.674
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.