Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
deoB | pgm | TRN7648_00326 | TRN7648_01278 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Phosphoglucomutase. | 0.855 |
deoB | prs | TRN7648_00326 | TRN7648_00232 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.881 |
deoB | rbsK | TRN7648_00326 | TRN7648_02567 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.855 |
deoB | rpiA | TRN7648_00326 | TRN7648_00806 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.957 |
deoB | rpiB | TRN7648_00326 | TRN7648_02637 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Ribose-5-phosphate isomerase B. | 0.872 |
deoB | tktA_1 | TRN7648_00326 | TRN7648_01345 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Transketolase 1; Belongs to the transketolase family. | 0.709 |
deoB | tktA_2 | TRN7648_00326 | TRN7648_01528 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Transketolase 1; Belongs to the transketolase family. | 0.709 |
deoB | tktA_3 | TRN7648_00326 | TRN7648_03969 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.709 |
deoB | tktB | TRN7648_00326 | TRN7648_00743 | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | Transketolase 2. | 0.863 |
pgm | deoB | TRN7648_01278 | TRN7648_00326 | Phosphoglucomutase. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.855 |
pgm | prkA | TRN7648_01278 | TRN7648_03968 | Phosphoglucomutase. | Phosphoribulokinase 1. | 0.408 |
pgm | prs | TRN7648_01278 | TRN7648_00232 | Phosphoglucomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.869 |
pgm | rbsK | TRN7648_01278 | TRN7648_02567 | Phosphoglucomutase. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.861 |
pgm | rpiA | TRN7648_01278 | TRN7648_00806 | Phosphoglucomutase. | Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.919 |
pgm | tktA_1 | TRN7648_01278 | TRN7648_01345 | Phosphoglucomutase. | Transketolase 1; Belongs to the transketolase family. | 0.778 |
pgm | tktA_2 | TRN7648_01278 | TRN7648_01528 | Phosphoglucomutase. | Transketolase 1; Belongs to the transketolase family. | 0.778 |
pgm | tktA_3 | TRN7648_01278 | TRN7648_03969 | Phosphoglucomutase. | Transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.778 |
prkA | pgm | TRN7648_03968 | TRN7648_01278 | Phosphoribulokinase 1. | Phosphoglucomutase. | 0.408 |
prkA | rpiA | TRN7648_03968 | TRN7648_00806 | Phosphoribulokinase 1. | Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.926 |
prkA | tktA_3 | TRN7648_03968 | TRN7648_03969 | Phosphoribulokinase 1. | Transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.811 |
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