STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacCD-alanyl-D-alanine carboxypeptidase DacC precursor; Belongs to the peptidase S11 family. (391 aa)    
Predicted Functional Partners:
dacB
D-alanyl-D-alanine carboxypeptidase DacB precursor.
     
 0.879
mrcA
Penicillin-binding protein 1A.
     
 0.879
pbpG_1
Penicillin-binding protein 2D.
  
 
 0.879
dnaX_2
DNA polymerase III subunit tau.
       0.862
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.862
spoVD
Sporulation-specific penicillin-binding protein.
 
 0.834
ftsI
Peptidoglycan synthase FtsI.
 
 0.584
CUH76266.1
Cell division protein FtsN.
       0.563
amiD
N-acetylmuramoyl-L-alanine amidase AmiD precursor.
  
  
 0.548
mreB
Rod shape-determining protein MreB.
 
  
 0.521
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.