STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH76280.1Outer membrane protein-associated (lipo)proteins. (1359 aa)    
Predicted Functional Partners:
CUH76216.1
Putative exonuclease, DNA ligase-associated.
    
 0.967
alaS_2
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.960
CUH76702.1
Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA.
   
 0.915
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.888
rapA
RNA polymerase-associated protein RapA.
 
 
 0.845
CUH82443.1
Lipoprotein NlpI.
   
 0.841
CUH78580.1
Hypothetical protein.
  
 
 0.840
inlA
Internalin-A precursor.
 
 
 0.837
CUH75254.1
Hypothetical protein.
  
 0.816
CUH76222.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
   
 0.811
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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