STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appAOligopeptide-binding protein AppA precursor. (566 aa)    
Predicted Functional Partners:
gsiC_2
Glutathione transport system permease protein GsiC.
 
  0.946
oppC
Stage 0 sporulation protein KC.
 
  0.942
gsiA_2
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 
 0.727
gsiD_3
Glutathione transport system permease protein GsiD.
 
  0.640
dppB_2
Dipeptide transport system permease protein DppB.
 
  0.640
oppA_1
Periplasmic oligopeptide-binding protein precursor.
  
 
 0.609
gsiD_1
Glutathione transport system permease protein GsiD.
 
  0.576
gsiD_2
Glutathione transport system permease protein GsiD.
  
  0.576
dppC_1
Dipeptide transport system permease protein DppC.
  
  0.576
dppB_1
Dipeptide transport system permease protein DppB.
  
  0.570
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.