STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnLNitrogen regulation protein NR(II). (361 aa)    
Predicted Functional Partners:
ntrC
Nitrogen assimilation regulatory protein.
 0.996
glnB_1
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.985
glnB_2
PII signal transducing protein; Belongs to the P(II) protein family.
  
 0.985
glnG
Nitrogen regulation protein NR(I).
 0.938
dus_1
Putative tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.933
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
0.922
arcB_1
Aerobic respiration control sensor protein ArcB.
 
 
0.917
dctD_1
C4-dicarboxylate transport transcriptional regulatory protein DctD.
 0.917
CUH80479.1
Blue-light-activated protein.
 
0.917
cheR_1
Chemotaxis protein methyltransferase.
   
 0.882
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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