STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH78245.1Protein of unknown function (FYDLN_acid). (107 aa)    
Predicted Functional Partners:
CUH78243.1
Hypothetical protein.
 
     0.759
CUH79070.1
Hypothetical protein.
  
    0.670
CUH76640.1
Chaperone protein DnaJ.
  
     0.638
CUH79666.1
Mitochondrial import inner membrane, translocase subunit.
  
     0.603
CUH79007.1
Hypothetical protein.
  
     0.551
CUH75033.1
Hypothetical protein.
  
     0.525
CUH77252.1
Hypothetical protein.
  
     0.519
CUH78572.1
MarR family protein.
  
     0.517
CUH76676.1
Hypothetical protein.
  
    0.489
tatA
Twin arginine translocase protein A; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.475
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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