STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kce_23-keto-5-aminohexanoate cleavage enzyme. (276 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
     0.757
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
    
 0.718
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
     0.641
scoB_1
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
    
  0.607
scoB_2
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
    
  0.607
kynB
Kynurenine formamidase.
  
    0.603
CUH80906.1
Putative conserved protein, contains double-stranded beta-helix domain.
  
    0.586
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.539
CUH78999.1
4-carboxymuconolactone decarboxylase.
 
     0.523
hcaR_1
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
 
     0.433
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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