STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH79318.1Core-2/I-Branching enzyme. (525 aa)    
Predicted Functional Partners:
CUH79319.1
Sulfotransferase family protein.
 
 
 0.950
dhbF
Dimodular nonribosomal peptide synthase.
  
 
 0.804
CUH79264.1
Vi polysaccharide export inner membrane protein VexB.
 
  
 0.785
CUH76965.1
Hypothetical protein.
  
 
   0.779
CUH76499.1
Hypothetical protein.
 
     0.778
CUH79010.1
Hypothetical protein.
  
     0.775
CUH79276.1
Hypothetical protein.
 
     0.775
CUH82498.1
Hypothetical protein.
  
     0.775
CUH75003.1
Vi polysaccharide export inner membrane protein VexD.
 
    0.773
CUH78562.1
Hypothetical protein.
  
     0.771
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.