Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH80075.1 | acpP_2 | TRN7648_02795 | TRN7648_02990 | D-alanyl-lipoteichoic acid biosynthesis protein DltB; Belongs to the membrane-bound acyltransferase family. | Acyl carrier protein. | 0.987 |
CUH80075.1 | dhbF | TRN7648_02795 | TRN7648_02462 | D-alanyl-lipoteichoic acid biosynthesis protein DltB; Belongs to the membrane-bound acyltransferase family. | Dimodular nonribosomal peptide synthase. | 0.976 |
acpP_2 | CUH80075.1 | TRN7648_02990 | TRN7648_02795 | Acyl carrier protein. | D-alanyl-lipoteichoic acid biosynthesis protein DltB; Belongs to the membrane-bound acyltransferase family. | 0.987 |
acpP_2 | dhbF | TRN7648_02990 | TRN7648_02462 | Acyl carrier protein. | Dimodular nonribosomal peptide synthase. | 0.995 |
acpP_2 | fabD | TRN7648_02990 | TRN7648_02825 | Acyl carrier protein. | Malonyl CoA-acyl carrier protein transacylase. | 0.996 |
acpP_2 | fabF_2 | TRN7648_02990 | TRN7648_02991 | Acyl carrier protein. | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.992 |
acpP_2 | nqo1_1 | TRN7648_02990 | TRN7648_00935 | Acyl carrier protein. | NADH-quinone oxidoreductase subunit 1. | 0.997 |
acpP_2 | nqo5 | TRN7648_02990 | TRN7648_02906 | Acyl carrier protein. | NADH-quinone oxidoreductase chain 5; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.995 |
acpP_2 | nuoB | TRN7648_02990 | TRN7648_02904 | Acyl carrier protein. | NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.993 |
acpP_2 | nuoD | TRN7648_02990 | TRN7648_02908 | Acyl carrier protein. | NADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.989 |
acpP_2 | nuoI | TRN7648_02990 | TRN7648_02922 | Acyl carrier protein. | NADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.993 |
acpP_2 | rplU | TRN7648_02990 | TRN7648_01613 | Acyl carrier protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
dhbF | CUH80075.1 | TRN7648_02462 | TRN7648_02795 | Dimodular nonribosomal peptide synthase. | D-alanyl-lipoteichoic acid biosynthesis protein DltB; Belongs to the membrane-bound acyltransferase family. | 0.976 |
dhbF | acpP_2 | TRN7648_02462 | TRN7648_02990 | Dimodular nonribosomal peptide synthase. | Acyl carrier protein. | 0.995 |
dhbF | fabD | TRN7648_02462 | TRN7648_02825 | Dimodular nonribosomal peptide synthase. | Malonyl CoA-acyl carrier protein transacylase. | 0.837 |
dhbF | fabF_2 | TRN7648_02462 | TRN7648_02991 | Dimodular nonribosomal peptide synthase. | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.533 |
fabD | acpP_2 | TRN7648_02825 | TRN7648_02990 | Malonyl CoA-acyl carrier protein transacylase. | Acyl carrier protein. | 0.996 |
fabD | dhbF | TRN7648_02825 | TRN7648_02462 | Malonyl CoA-acyl carrier protein transacylase. | Dimodular nonribosomal peptide synthase. | 0.837 |
fabD | fabF_2 | TRN7648_02825 | TRN7648_02991 | Malonyl CoA-acyl carrier protein transacylase. | 3-oxoacyl-[acyl-carrier-protein] synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.999 |
fabD | rplU | TRN7648_02825 | TRN7648_01613 | Malonyl CoA-acyl carrier protein transacylase. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.508 |
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