Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
accB_2 | accC_2 | TRN7648_03058 | TRN7648_03057 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Biotin carboxylase. | 0.999 |
accB_2 | acsA_4 | TRN7648_03058 | TRN7648_03054 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Acetyl-coenzyme A synthetase. | 0.880 |
accB_2 | cfiA | TRN7648_03058 | TRN7648_03056 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 2-oxoglutarate carboxylase large subunit. | 0.988 |
accB_2 | gnl | TRN7648_03058 | TRN7648_03059 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Gluconolactonase precursor. | 0.532 |
accB_2 | yutF | TRN7648_03058 | TRN7648_03055 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Putative hydrolase YutF. | 0.778 |
accC_2 | accB_2 | TRN7648_03057 | TRN7648_03058 | Biotin carboxylase. | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.999 |
accC_2 | acsA_4 | TRN7648_03057 | TRN7648_03054 | Biotin carboxylase. | Acetyl-coenzyme A synthetase. | 0.917 |
accC_2 | cfiA | TRN7648_03057 | TRN7648_03056 | Biotin carboxylase. | 2-oxoglutarate carboxylase large subunit. | 0.996 |
accC_2 | gnl | TRN7648_03057 | TRN7648_03059 | Biotin carboxylase. | Gluconolactonase precursor. | 0.532 |
accC_2 | yutF | TRN7648_03057 | TRN7648_03055 | Biotin carboxylase. | Putative hydrolase YutF. | 0.794 |
acsA_4 | accB_2 | TRN7648_03054 | TRN7648_03058 | Acetyl-coenzyme A synthetase. | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.880 |
acsA_4 | accC_2 | TRN7648_03054 | TRN7648_03057 | Acetyl-coenzyme A synthetase. | Biotin carboxylase. | 0.917 |
acsA_4 | cfiA | TRN7648_03054 | TRN7648_03056 | Acetyl-coenzyme A synthetase. | 2-oxoglutarate carboxylase large subunit. | 0.828 |
acsA_4 | gnl | TRN7648_03054 | TRN7648_03059 | Acetyl-coenzyme A synthetase. | Gluconolactonase precursor. | 0.533 |
acsA_4 | yutF | TRN7648_03054 | TRN7648_03055 | Acetyl-coenzyme A synthetase. | Putative hydrolase YutF. | 0.773 |
atpE | yutF | TRN7648_00111 | TRN7648_03055 | Lipid-binding protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | Putative hydrolase YutF. | 0.433 |
cfiA | accB_2 | TRN7648_03056 | TRN7648_03058 | 2-oxoglutarate carboxylase large subunit. | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.988 |
cfiA | accC_2 | TRN7648_03056 | TRN7648_03057 | 2-oxoglutarate carboxylase large subunit. | Biotin carboxylase. | 0.996 |
cfiA | acsA_4 | TRN7648_03056 | TRN7648_03054 | 2-oxoglutarate carboxylase large subunit. | Acetyl-coenzyme A synthetase. | 0.828 |
cfiA | gnl | TRN7648_03056 | TRN7648_03059 | 2-oxoglutarate carboxylase large subunit. | Gluconolactonase precursor. | 0.532 |
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