STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheD_1Chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. (159 aa)    
Predicted Functional Partners:
cheR_1
Chemotaxis protein methyltransferase.
 
 
 0.998
cheR_3
Chemotaxis protein methyltransferase.
 
 
 0.991
cheW
Coupling protein CheW.
 
 
 0.980
bdlA
Chemotaxis regulator BdlA.
 
 0.970
cheR_2
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
  
 0.961
cheA
Chemotaxis protein CheA.
 
 
 0.954
cheB3
Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon.
 
 
 0.946
tsr_2
Serine chemoreceptor protein.
 
  0.901
tar_3
Aspartate chemoreceptor protein.
 
 0.872
flhB
Flagellar biosynthetic protein FlhB.
 
  
 0.854
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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