STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH80858.1TRAP-type C4-dicarboxylate transport system, small permease component. (167 aa)    
Predicted Functional Partners:
siaT_5
Neu5Ac permease.
 
  0.960
yiaO_2
Extracytoplasmic solute receptor protein YiaO.
 
    0.918
ydfH_4
Putative HTH-type transcriptional regulator YdfH.
 
     0.862
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
     0.688
idnD
L-idonate 5-dehydrogenase.
 
     0.637
mtlK
Mannitol 2-dehydrogenase.
 
     0.596
siaT_3
Neu5Ac permease.
  
  0.513
siaT_4
Neu5Ac permease.
  
  0.513
siaT_6
Neu5Ac permease.
  
  0.513
siaT_7
Neu5Ac permease.
  
  0.513
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.