STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcaR_2Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
cbl
HTH-type transcriptional regulator cbl; Belongs to the LysR transcriptional regulatory family.
  
     0.724
cmpR_3
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.703
dmlR_6
D-malate degradation protein R; Belongs to the LysR transcriptional regulatory family.
  
     0.695
dmlR_3
D-malate degradation protein R; Belongs to the LysR transcriptional regulatory family.
  
     0.679
gcvA_2
Gcv operon activator; Belongs to the LysR transcriptional regulatory family.
  
     0.632
gcvA_4
Gcv operon activator; Belongs to the LysR transcriptional regulatory family.
  
     0.588
dmlR_7
D-malate degradation protein R; Belongs to the LysR transcriptional regulatory family.
  
     0.577
sbcC
Nuclease SbcCD subunit C.
       0.576
sbcD
Nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.576
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.545
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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