STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qseCSensor protein QseC. (445 aa)    
Predicted Functional Partners:
qseB
Transcriptional regulatory protein QseB.
 0.988
bfmBAB
2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.985
cheR_1
Chemotaxis protein methyltransferase.
   
 0.967
basR
Transcriptional regulatory protein BasR.
 0.949
lpdA
Dihydrolipoyl dehydrogenase.
    
 0.916
CUH81818.1
Hypothetical protein.
 
     0.894
fixL
Sensor protein FixL.
 
 
 0.891
cheR_3
Chemotaxis protein methyltransferase.
   
 0.873
tctD
Transcriptional regulatory protein tctD.
 0.853
CUH81822.1
Hypothetical protein.
 
     0.850
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.