Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH76154.1 | CUH81877.1 | TRN7648_00808 | TRN7648_03684 | Hypothetical protein. | Glutaredoxin 3. | 0.658 |
CUH76547.1 | CUH81877.1 | TRN7648_00992 | TRN7648_03684 | Hypothetical protein. | Glutaredoxin 3. | 0.893 |
CUH76547.1 | ribBA | TRN7648_00992 | TRN7648_00650 | Hypothetical protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.760 |
CUH81875.1 | CUH81877.1 | TRN7648_03683 | TRN7648_03684 | Hypothetical protein. | Glutaredoxin 3. | 0.923 |
CUH81877.1 | CUH76154.1 | TRN7648_03684 | TRN7648_00808 | Glutaredoxin 3. | Hypothetical protein. | 0.658 |
CUH81877.1 | CUH76547.1 | TRN7648_03684 | TRN7648_00992 | Glutaredoxin 3. | Hypothetical protein. | 0.893 |
CUH81877.1 | CUH81875.1 | TRN7648_03684 | TRN7648_03683 | Glutaredoxin 3. | Hypothetical protein. | 0.923 |
CUH81877.1 | blh_1 | TRN7648_03684 | TRN7648_00086 | Glutaredoxin 3. | Beta-lactamase hydrolase-like protein. | 0.699 |
CUH81877.1 | msrA | TRN7648_03684 | TRN7648_02566 | Glutaredoxin 3. | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.782 |
CUH81877.1 | msrA3 | TRN7648_03684 | TRN7648_01997 | Glutaredoxin 3. | Peptide methionine sulfoxide reductase MsrA 3; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.782 |
CUH81877.1 | nrdJ | TRN7648_03684 | TRN7648_01495 | Glutaredoxin 3. | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.893 |
CUH81877.1 | nrdZ | TRN7648_03684 | TRN7648_03467 | Glutaredoxin 3. | Ribonucleoside-diphosphate reductase NrdZ; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.893 |
CUH81877.1 | ribBA | TRN7648_03684 | TRN7648_00650 | Glutaredoxin 3. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.744 |
CUH81877.1 | secB | TRN7648_03684 | TRN7648_02585 | Glutaredoxin 3. | Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.717 |
blh_1 | CUH81877.1 | TRN7648_00086 | TRN7648_03684 | Beta-lactamase hydrolase-like protein. | Glutaredoxin 3. | 0.699 |
msrA | CUH81877.1 | TRN7648_02566 | TRN7648_03684 | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Glutaredoxin 3. | 0.782 |
msrA3 | CUH81877.1 | TRN7648_01997 | TRN7648_03684 | Peptide methionine sulfoxide reductase MsrA 3; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Glutaredoxin 3. | 0.782 |
nrdJ | CUH81877.1 | TRN7648_01495 | TRN7648_03684 | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Glutaredoxin 3. | 0.893 |
nrdJ | nrdZ | TRN7648_01495 | TRN7648_03467 | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Ribonucleoside-diphosphate reductase NrdZ; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.867 |
nrdJ | ribBA | TRN7648_01495 | TRN7648_00650 | Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.760 |
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