STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
actP_5Copper-transporting P-type ATPase. (780 aa)    
Predicted Functional Partners:
actP_1
Copper-transporting P-type ATPase.
 
 
0.839
actP_4
Copper-transporting P-type ATPase.
 
 
0.836
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
    
 0.825
ophA1
Phthalate dioxygenase reductase.
    
 0.825
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.778
ybaT
Inner membrane transport protein YbaT.
 
   
 0.764
copZ
Copper chaperone CopZ.
  
 
 0.753
CUH81914.1
Hypothetical protein.
 
     0.719
ydjZ
TVP38/TMEM64 family inner membrane protein YdjZ.
 
     0.706
CUH81915.1
Hypothetical protein.
  
    0.650
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.