STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traGConjugal transfer protein TraG. (660 aa)    
Predicted Functional Partners:
CUH81924.1
Type IV secretion system T-DNA border endonuclease VirD2.
 
   
 0.976
CUH81923.1
Bacterial mobilisation protein (MobC).
 
     0.948
ptlG
Pertussis toxin liberation protein G.
 
 
 0.931
CUH76754.1
Putative proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1.
   
 
 0.925
CUH78202.1
Hypothetical protein.
   
 
 0.925
virB4
Type IV secretion system protein virB4.
  
 0.899
virB9
Type IV secretion system protein virB9 precursor.
   
 0.894
CUH81695.1
TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.868
CUH81704.1
Type IV secretion system protein VirB8.
 
   
 0.868
CUH81713.1
Type IV secretion system protein VirB3.
 
   
 0.868
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.