STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutR_3L-lactate utilization operon repressor. (245 aa)    
Predicted Functional Partners:
yjfF_1
Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
     0.828
ytfT
Inner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family.
 
     0.822
rbsA_5
Ribose import ATP-binding protein RbsA.
 
     0.817
lutR_1
L-lactate utilization operon repressor.
  
     0.725
lutR_2
L-lactate utilization operon repressor.
  
    0.688
ytfQ
ABC transporter periplasmic-binding protein YtfQ precursor.
 
     0.669
mcbR_1
HTH-type transcriptional regulator McbR.
  
    0.667
pdhR
Pyruvate dehydrogenase complex repressor.
  
     0.652
lldR_2
Putative L-lactate dehydrogenase operon regulatory protein.
  
     0.610
ydfH_1
Putative HTH-type transcriptional regulator YdfH.
  
    0.605
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.