STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylF_2D-xylose-binding periplasmic protein precursor. (337 aa)    
Predicted Functional Partners:
xylH_3
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.965
rbsA_6
Ribose import ATP-binding protein RbsA.
 
 0.955
CUH82277.1
ASPIC and UnbV.
 
     0.902
xylH_2
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.901
nagC
N-acetylglucosamine repressor.
 
     0.817
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.795
xylH_1
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.788
ccp
Cytochrome c551 peroxidase precursor.
 
     0.782
xylF_1
D-xylose-binding periplasmic protein precursor.
  
  
 
0.765
rbsA_3
Ribose import ATP-binding protein RbsA.
 
 0.627
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.