STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cya_23Cyclolysin. (861 aa)    
Predicted Functional Partners:
hlyA_10
Hemolysin, chromosomal.
  
     0.775
CUH80565.1
VCBS repeat.
  
 
  0.724
hlyD
Hemolysin secretion protein D, chromosomal.
  
    0.720
apxIB_2
RTX-I toxin determinant B.
 
    0.708
CUH74983.1
VCBS repeat.
  
 
  0.605
prsE_1
Type I secretion system membrane fusion protein PrsE.
  
    0.600
prtA
Serralysin.
 
    
0.582
cya_16
Cyclolysin.
  
 
 
0.568
CUH82618.1
Vi polysaccharide export inner membrane protein VexD.
 
     0.568
kpsT_2
Polysialic acid transport ATP-binding protein KpsT.
 
     0.562
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.