STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB72504.1Hypothetical protein. (679 aa)    
Predicted Functional Partners:
SFB72487.1
PAP2 superfamily protein.
 
 
  0.962
SFB72469.1
Transcriptional regulator, SARP family.
 
     0.885
SFD10426.1
Octaheme c-type cytochrome, tetrathionate reductase family.
   
 0.809
SFC87470.1
Ig-like domain (group 3).
  
 
 0.662
SFD26925.1
Serine protease, subtilisin family.
  
 
 0.662
SFC44668.1
V8-like Glu-specific endopeptidase.
  
 
 0.660
SFD18776.1
Hemolysin-type calcium-binding repeat-containing protein.
  
 
 0.561
SFC23454.1
Hemolysin-type calcium-binding repeat-containing protein.
  
 
  0.550
SFB72536.1
Hypothetical protein.
   
 0.538
SFD30775.1
Glutathione S-transferase, C-terminal domain.
  
   0.534
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.