STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB75277.1Catechol 2,3-dioxygenase. (172 aa)    
Predicted Functional Partners:
SFD20173.1
Propane monooxygenase reductase subunit.
    
  0.792
SFB72999.1
Phenol 2-monooxygenase.
    
 0.751
SFC70514.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
    
 0.751
SFB95948.1
Cu+-exporting ATPase.
    
  0.624
SFD20152.1
Propane monooxygenase small subunit.
    
  0.574
SFB75264.1
Penicillin amidase.
       0.550
SFD09588.1
Hypothetical protein.
    
 0.520
SFD20101.1
Hypothetical protein.
    
 0.520
SFD17134.1
Predicted ester cyclase.
    
  0.513
SFB84133.1
methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase.
     
 0.483
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.