STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC00180.1Hypothetical protein. (142 aa)    
Predicted Functional Partners:
SFC00245.1
Hypothetical protein.
 
     0.946
SFC00212.1
Hypothetical protein.
       0.782
SFB97444.1
Holliday junction resolvasome RuvABC endonuclease subunit.
 
     0.772
SFB99346.1
Hypothetical protein.
 
     0.772
SFB94725.1
Hypothetical protein.
 
     0.771
SFC90432.1
Hypothetical protein.
 
     0.769
SFC00311.1
PD-(D/E)XK nuclease superfamily.
 
     0.749
SFB99403.1
PD-(D/E)XK nuclease superfamily.
 
     0.746
SFD20970.1
Hypothetical protein.
  
     0.723
SFB99065.1
Hypothetical protein.
  
     0.722
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.