STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC00592.1Peptidase S24-like. (225 aa)    
Predicted Functional Partners:
SFC00368.1
Uncharacterised protein family UPF0547.
 
    0.833
SFC00625.1
Hypothetical protein.
       0.773
SFB99497.1
Uncharacterised protein family UPF0547.
  
    0.754
SFC00276.1
AAA domain-containing protein.
 
     0.738
SFB94812.1
ATP-dependent helicase IRC3.
   
    0.654
SFB94040.1
Phage tail tape measure protein, lambda family.
   
    0.620
SFB98658.1
Phage tail tape measure protein, lambda family.
   
    0.620
SFC01529.1
Hypothetical protein.
   
    0.620
SFB96606.1
Phage tail tape measure protein, lambda family.
   
    0.620
SFC90920.1
Phage tail tape measure protein, lambda family.
   
    0.620
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.