STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC05434.1Sarcosine oxidase subunit delta. (107 aa)    
Predicted Functional Partners:
SFC05376.1
Sarcosine oxidase subunit gamma.
 
 0.999
SFC05407.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.999
SFC96723.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
 0.997
SFC05492.1
Sarcosine oxidase subunit beta.
 
 0.973
SFD05551.1
Cytochrome-dependent sulfide dehydrogenase (flavoprotein).
  
 0.937
SFD13658.1
Sulfide:quinone oxidoreductase.
  
 0.937
SFC95978.1
Aminomethyltransferase.
  
 0.935
SFC77375.1
Glutamate synthase (NADPH) large subunit.
    
  0.916
SFC62453.1
Glycine/D-amino acid oxidase.
 
 0.908
SFD17557.1
D-amino-acid dehydrogenase.
  
 0.885
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.