STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC21928.1Spermidine/putrescine transport system substrate-binding protein. (375 aa)    
Predicted Functional Partners:
SFC21996.1
Spermidine/putrescine transport system permease protein.
 
 
  0.950
SFC21967.1
Spermidine/putrescine transport system permease protein.
 
 
  0.945
SFC22028.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.909
SFC21851.1
Predicted TIM-barrel enzyme.
 
     0.824
SFC21530.1
Polysaccharide deacetylase.
 
    0.713
SFC26915.1
Putative spermidine/putrescine transport system permease protein.
  
 
  0.697
SFC21902.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.690
SFC73490.1
Spermidine/putrescine transport system permease protein.
  
 
  0.657
SFB74358.1
Spermidine/putrescine transport system permease protein.
 
 
  0.652
SFC01783.1
Putative spermidine/putrescine transport system permease protein.
   
 
  0.649
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.