STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC27012.1Putative spermidine/putrescine transport system substrate-binding protein. (350 aa)    
Predicted Functional Partners:
SFC26915.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.981
SFC01783.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.943
SFC26953.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.902
SFC01809.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.897
potA-2
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
  0.889
potA
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  0.863
SFC26884.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
     0.803
SFC26805.1
acyl-CoA thioester hydrolase.
       0.773
SFC26849.1
Glutathione S-transferase.
       0.773
SFC25402.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.762
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.