STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC47354.1Hypothetical protein. (79 aa)    
Predicted Functional Partners:
SFC35486.1
Hypothetical protein.
   
    0.999
SFD12531.1
Hypothetical protein.
  
    0.999
SFD24704.1
Cytochrome c oxidase cbb3-type subunit 4.
  
    0.975
SFD24663.1
Cytochrome c oxidase accessory protein FixG.
   
    0.966
SFD24681.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
    0.830
SFD32065.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
    0.830
SFB70852.1
Polyphosphate:nucleotide phosphotransferase, PPK2 family.
   
    0.824
SFB84893.1
Polyphosphate kinase 2, PA0141 family.
   
    0.824
SFC55912.1
Polyphosphate kinase 2, PA0141 family.
   
    0.824
SFC09841.1
Transcriptional regulator, TraR/DksA family.
 
    0.760
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.