STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC45918.1Yip1 domain-containing protein. (204 aa)    
Predicted Functional Partners:
SFC45949.1
Yip1 domain-containing protein.
 
  
 0.947
SFC46023.1
Fe-S cluster assembly ATP-binding protein.
     
 0.905
SFC45987.1
Fe-S cluster assembly protein SufD.
     
 0.902
SFC45883.1
Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
    0.791
SFC46110.1
Iron-regulated ABC transporter membrane component SufB.
     
 0.721
SFB70291.1
Hypothetical protein.
  
     0.654
SFC78364.1
Hypothetical protein.
  
     0.644
SFC46171.1
Haem-binding uptake, Tiki superfamily, ChaN.
 
     0.612
SFD01422.1
Protein of unknown function.
  
     0.594
SFC35208.1
Hypothetical protein.
  
     0.571
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.