STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC58053.1Sulfide dehydrogenase (flavoprotein) subunit SudA. (918 aa)    
Predicted Functional Partners:
SFC10466.1
Dihydrouracil dehydrogenase (NAD+).
 
 0.999
SFC77375.1
Glutamate synthase (NADPH) large subunit.
 0.999
SFC58090.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
 
 
 0.998
SFD23529.1
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.997
SFD20173.1
Propane monooxygenase reductase subunit.
  
 0.988
SFD27273.1
Sulfide dehydrogenase (flavoprotein) subunit SudB.
 
0.988
SFD27363.1
Hypothetical protein.
 
 
 0.986
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
  
 
 0.971
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
  
 
 0.965
SFC18670.1
Ferredoxin hydrogenase gamma subunit.
  
 0.960
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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