STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC54256.1Transcriptional regulator, GntR family. (284 aa)    
Predicted Functional Partners:
SFC54284.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
     0.800
SFD33746.1
DNA-binding transcriptional regulator, FadR family.
  
    0.771
SFC29502.1
DNA-binding transcriptional regulator, GntR family.
  
    0.740
SFC25647.1
DNA-binding transcriptional regulator, GntR family.
  
    0.690
SFC85611.1
DNA-binding transcriptional regulator, GntR family.
  
    0.685
SFC54314.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.633
SFD13332.1
DNA-binding transcriptional regulator, GntR family.
  
    0.611
SFD20173.1
Propane monooxygenase reductase subunit.
    
  0.528
SFB72719.1
Transcriptional regulator, GntR family.
  
    0.521
SFC54228.1
2-hydroxy-3-oxopropionate reductase.
       0.503
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.