Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFB71619.1 | SFC55646.1 | SAMN04488094_10184 | SAMN04488094_10654 | Carboxypeptidase Taq Metallo peptidase. MEROPS family M32; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. | Oligoendopeptidase F. | 0.517 |
SFB78658.1 | SFC55646.1 | SAMN04488094_101489 | SAMN04488094_10654 | DNA polymerase III, chi subunit. | Oligoendopeptidase F. | 0.445 |
SFB78658.1 | secE | SAMN04488094_101489 | SAMN04488094_12344 | DNA polymerase III, chi subunit. | Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.717 |
SFC09890.1 | SFC55646.1 | SAMN04488094_102533 | SAMN04488094_10654 | Flagellar motor switch protein FliM. | Oligoendopeptidase F. | 0.639 |
SFC55448.1 | SFC55646.1 | SAMN04488094_10647 | SAMN04488094_10654 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Oligoendopeptidase F. | 0.471 |
SFC55448.1 | murI | SAMN04488094_10647 | SAMN04488094_101569 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.517 |
SFC55589.1 | SFC55620.1 | SAMN04488094_10652 | SAMN04488094_10653 | TadE-like protein. | Hypothetical protein. | 0.773 |
SFC55589.1 | SFC55646.1 | SAMN04488094_10652 | SAMN04488094_10654 | TadE-like protein. | Oligoendopeptidase F. | 0.460 |
SFC55620.1 | SFC55589.1 | SAMN04488094_10653 | SAMN04488094_10652 | Hypothetical protein. | TadE-like protein. | 0.773 |
SFC55620.1 | SFC55646.1 | SAMN04488094_10653 | SAMN04488094_10654 | Hypothetical protein. | Oligoendopeptidase F. | 0.460 |
SFC55646.1 | SFB71619.1 | SAMN04488094_10654 | SAMN04488094_10184 | Oligoendopeptidase F. | Carboxypeptidase Taq Metallo peptidase. MEROPS family M32; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. | 0.517 |
SFC55646.1 | SFB78658.1 | SAMN04488094_10654 | SAMN04488094_101489 | Oligoendopeptidase F. | DNA polymerase III, chi subunit. | 0.445 |
SFC55646.1 | SFC09890.1 | SAMN04488094_10654 | SAMN04488094_102533 | Oligoendopeptidase F. | Flagellar motor switch protein FliM. | 0.639 |
SFC55646.1 | SFC55448.1 | SAMN04488094_10654 | SAMN04488094_10647 | Oligoendopeptidase F. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.471 |
SFC55646.1 | SFC55589.1 | SAMN04488094_10654 | SAMN04488094_10652 | Oligoendopeptidase F. | TadE-like protein. | 0.460 |
SFC55646.1 | SFC55620.1 | SAMN04488094_10654 | SAMN04488094_10653 | Oligoendopeptidase F. | Hypothetical protein. | 0.460 |
SFC55646.1 | SFC72234.1 | SAMN04488094_10654 | SAMN04488094_108114 | Oligoendopeptidase F. | Lysophospholipase. | 0.406 |
SFC55646.1 | murI | SAMN04488094_10654 | SAMN04488094_101569 | Oligoendopeptidase F. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.446 |
SFC55646.1 | secE | SAMN04488094_10654 | SAMN04488094_12344 | Oligoendopeptidase F. | Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.453 |
SFC72234.1 | SFC55646.1 | SAMN04488094_108114 | SAMN04488094_10654 | Lysophospholipase. | Oligoendopeptidase F. | 0.406 |
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