STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC63731.1L,D-transpeptidase catalytic domain. (184 aa)    
Predicted Functional Partners:
SFC78284.1
L,D-transpeptidase catalytic domain.
 
    0.690
SFD03196.1
Penicillin-insensitive murein endopeptidase.
  
     0.532
SFD06772.1
L,D-transpeptidase catalytic domain.
 
    0.525
SFD25289.1
Predicted transglutaminase-like cysteine proteinase.
  
     0.460
SFC92203.1
Hypothetical protein.
  
     0.436
SFC63766.1
1-Cys peroxiredoxin.
       0.416
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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