STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC63863.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (114 aa)    
Predicted Functional Partners:
SFC65948.1
Flagellar hook protein FlgE.
   
    0.999
SFC63895.1
Histidine kinase-like ATPase domain-containing protein.
 
 0.999
SFC70058.1
Haem-NO-binding.
 
    0.999
SFD18393.1
Rod binding protein.
   
    0.999
flgH
Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.996
SFD10090.1
Flagellar basal-body rod protein FlgB.
   
    0.995
SFB70700.1
Flagellar motor switch protein FliG.
 
   0.981
SFC78013.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.976
SFC65966.1
Flagellar hook-associated protein 1 FlgK; Belongs to the flagella basal body rod proteins family.
  
    0.970
SFC66275.1
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.968
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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