STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC69646.1Choline dehydrogenase. (539 aa)    
Predicted Functional Partners:
SFD24178.1
Ankyrin repeat.
    
 0.929
SFB71952.1
Cytochrome c.
  
 0.878
SFD20279.1
WD domain, G-beta repeat.
    
  0.857
pdhA-2
2-oxoisovalerate dehydrogenase E1 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
   
 
  0.678
SFB83229.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
  0.675
SFB75215.1
Ferredoxin-type protein NapF.
    
  0.674
SFD05516.1
Sulfur dehydrogenase subunit SoxD.
  
 
 0.670
SFB72928.1
Tfp pilus assembly protein PilF.
    
  0.630
SFB70159.1
Flp pilus assembly protein TadD, contains TPR repeats.
    
  0.630
SFC09541.1
Sulfotransferase family protein.
    
  0.630
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.