STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC72329.1L-2-hydroxyglutarate oxidase LhgO. (372 aa)    
Predicted Functional Partners:
SFC77375.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.916
SFC87928.1
Phosphocarrier protein FPr.
  
 
 0.864
SFC80552.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.851
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.732
SFB72371.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
     
 0.718
SFC18638.1
Formate dehydrogenase beta subunit.
    
 0.691
SFD05873.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
    
  0.691
SFC18670.1
Ferredoxin hydrogenase gamma subunit.
    
  0.675
SFB80266.1
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.665
SFB73174.1
Thioredoxin reductase.
 
  0.646
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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