STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC70086.1Phosphoglycolate phosphatase. (231 aa)    
Predicted Functional Partners:
SFC66529.1
Ribulose-bisphosphate carboxylase small chain.
    
 0.826
SFC49412.1
Phosphoglycolate phosphatase.
  
  
  0.822
SFD10658.1
Phosphoglycolate phosphatase.
  
  
 
0.822
cbbL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.812
SFD12329.1
Glycolate oxidase iron-sulfur subunit.
    
 0.804
SFD12351.1
Glycolate oxidase FAD binding subunit.
    
  0.803
SFC70114.1
Protein of unknown function.
 
     0.791
SFB75343.1
Phosphoglycolate phosphatase.
  
  
 
0.758
SFC03308.1
Glyoxylate/hydroxypyruvate reductase A.
    
  0.733
SFC29680.1
Glyoxylate/hydroxypyruvate reductase A.
    
  0.733
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.