STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC70266.1Uncharacterized conserved protein, DUF983 family. (140 aa)    
Predicted Functional Partners:
SFC70294.1
NUDIX domain-containing protein.
 
     0.874
ctaG
Cytochrome c oxidase assembly protein subunit 11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.638
SFC39024.1
Surfeit locus 1 family protein.
 
     0.605
SFC98957.1
Uncharacterized membrane protein.
  
     0.596
SFC86193.1
Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family.
 
     0.580
SFD24892.1
Cytochrome c.
  
     0.537
SFC70211.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.527
SFC70237.1
EF hand.
       0.501
SFC56519.1
Protein of unknown function.
  
     0.498
SFC86127.1
Protein of unknown function.
  
     0.492
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.