STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC69591.1TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (362 aa)    
Predicted Functional Partners:
SFC69538.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.895
SFC69565.1
TRAP transporter, DctM subunit.
 
    0.895
SFC18741.1
TRAP transporter, DctM subunit.
 
    0.777
SFC85242.1
TRAP transporter, DctM subunit.
 
    0.775
SFC54336.1
TRAP transporter, DctM subunit.
 
    0.773
SFC85267.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.762
SFC18700.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.752
SFB72831.1
TRAP transporter, DctM subunit.
 
    0.728
SFC28370.1
TRAP transporter, DctM subunit.
  
     0.727
SFB72848.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.606
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.